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Environmental vulnerability of the global ocean epipelagic plankton community interactome

A global photic-ocean plankton ecological network predicts distinct vulnerabilities to environmental change across marine biomes. Marine plankton form comp lex communities of interacting organisms at the base of the food web, which sustain oceanic …

Insights into biotic and abiotic modulation of ocean mesopelagic communities

Marine plankton mitigate anthropogenic greenhouse gases, modulate biogeochemical cycles, and provide fishery resources. Plankton is distributed across a stratified ecosystem of sunlit surface waters and a vast, though understudied, mesopelagic …

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems

Interplay within microbial communities impacts ecosystems on several scales, and elucidation of the consequent effects is a difficult task in ecology. In particular, the integration of genome-scale data within quantitative models of microbial …

Global transcriptional responses of Acidithiobacillus ferrooxidans Wenelen under different sulfide minerals

The bioleaching potential of a bacterial consortium

Impact of the species compartment definition on quantitative modeling of microbial communities

A new genome of Acidithiobacillus thiooxidans provides insights into adaptation to a bioleaching environment

Enterococcus faecalis reconfigures its transcriptional regulatory network activation at different copper levels

MeDUSA: a sage-based tool for computing the stoichiometric capacitance of a metabolic network

Metabolomic study of Chilean biomining bacteria Acidithiobacillus ferrooxidans strain Wenelen and Acidithiobacillus thiooxidans strain Licanantay